CellProfiler is free, open-source software for quantitative analysis of biological images. No prior experience in programming or computer vision is required – this page is intended to help you get up and running.

Load an example CellProfiler pipeline, a series of image-processing modules

Adjust the settings to measure the phenotypes of interest in your images

Process images automatically – even millions

Export your data to a spreadsheet or database

Explore your data and classify complex or subtle phenotypes using machine learning in CellProfiler Analyst